3PIO date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand K, LMA, MG, NA enzyme
note 3PIO is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
1


2


3


4


A


B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


Z


Primary referenceCrystal structure of the synergistic antibiotic pair, lankamycin and lankacidin, in complex with the large ribosomal subunit., Belousoff MJ, Shapira T, Bashan A, Zimmerman E, Rozenberg H, Arakawa K, Kinashi H, Yonath A, Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):2717-22. Epub 2011 Jan 31. PMID:21282615
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3518 Kb) [Save to disk]
  • Biological Unit Coordinates (3pio.pdb1.gz) 3502 Kb
  • LPC: Ligand-Protein Contacts for 3PIO
  • CSU: Contacts of Structural Units for 3PIO
  • Structure Factors (4460 Kb)
  • Retrieve 3PIO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PIO from S2C, [Save to disk]
  • Re-refined 3pio structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PIO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pio] [3pio_1] [3pio_2] [3pio_3] [3pio_4] [3pio_A] [3pio_B] [3pio_C] [3pio_D] [3pio_E] [3pio_F] [3pio_G] [3pio_H] [3pio_I] [3pio_J] [3pio_K] [3pio_L] [3pio_M] [3pio_N] [3pio_O] [3pio_P] [3pio_Q] [3pio_R] [3pio_S] [3pio_T] [3pio_U] [3pio_V] [3pio_W] [3pio_X] [3pio_Y] [3pio_Z]
  • SWISS-PROT database:
  • Domains found in 3PIO: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART

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