OCA Atlas for 3PKP

3PKP

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

DTP, MG

enzyme

Gene
Ontology

Chain	Function	Process	Component
L, J, C, I, A, B, K, D

Primary reference

Expanding the Nucleotide and Sugar 1-Phosphate Promiscuity of Nucleotidyltransferase RmlA via Directed Evolution., Moretti R, Chang A, Peltier-Pain P, Bingman CA, Phillips GN Jr, Thorson JS, J Biol Chem. 2011 Apr 15;286(15):13235-43. Epub 2011 Feb 11. PMID:21317292

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (770 Kb) [Save to disk]

Biological Unit Coordinates (3pkp.pdb1.gz) 383 Kb

Biological Unit Coordinates (3pkp.pdb2.gz) 386 Kb

Biological Unit Coordinates (3pkp.pdb3.gz) 196 Kb

Biological Unit Coordinates (3pkp.pdb4.gz) 195 Kb

Biological Unit Coordinates (3pkp.pdb5.gz) 197 Kb

Biological Unit Coordinates (3pkp.pdb6.gz) 196 Kb

LPC: Ligand-Protein Contacts for 3PKP

CSU: Contacts of Structural Units for 3PKP

Structure Factors (412 Kb)

Retrieve 3PKP in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3PKP from S2C, [Save to disk]

Re-refined 3pkp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PKP in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pkp] [3pkp_A] [3pkp_B] [3pkp_C] [3pkp_D] [3pkp_I] [3pkp_J] [3pkp_K] [3pkp_L]

SWISS-PROT database:

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