3PLS Transferase date Nov 15, 2010
title Ron In Complex With Ligand Amp-Pnp
authors J.Wang, S.Steinbacher, M.Augustin, P.Schreiner, D.Epstein, M.J.Mu A.P.Crew
compound source
Molecule: Macrophage-Stimulating Protein Receptor
Chain: A
Fragment: Ron Kinase Domain Residues 1060-1357
Synonym: Msp Receptor, Cdw136, Protein-Tyrosine Kinase 8, P Macrophage-Stimulating Protein Receptor Beta Chain;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mst1r, Ptk8, Ron
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 41
R_factor 0.231 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.631 98.631 45.297 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.24 Å
ligand ANP, MG enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of a constitutively active mutant RON kinase suggests an intramolecular autophosphorylation hypothesis., Wang J, Steinbacher S, Augustin M, Schreiner P, Epstein D, Mulvihill MJ, Crew AP, Biochemistry. 2010 Sep 21;49(37):7972-4. PMID:20726546
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3pls.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3PLS
  • CSU: Contacts of Structural Units for 3PLS
  • Structure Factors (148 Kb)
  • Retrieve 3PLS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PLS from S2C, [Save to disk]
  • Re-refined 3pls structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PLS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PLS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PLS, from MSDmotif at EBI
  • Fold representative 3pls from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pls_A] [3pls]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PLS: [TyrKc ] by SMART
  • Other resources with information on 3PLS
  • Community annotation for 3PLS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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