3PLS Transferase date Nov 15, 2010
title Ron In Complex With Ligand Amp-Pnp
authors J.Wang, S.Steinbacher, M.Augustin, P.Schreiner, D.Epstein, M.J.Mu A.P.Crew
compound source
Molecule: Macrophage-Stimulating Protein Receptor
Chain: A
Fragment: Ron Kinase Domain Residues 1060-1357
Synonym: Msp Receptor, Cdw136, Protein-Tyrosine Kinase 8, P Macrophage-Stimulating Protein Receptor Beta Chain;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mst1r, Ptk8, Ron
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 41
R_factor 0.231 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.631 98.631 45.297 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.24 Å
ligand ANP, MG enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of a constitutively active mutant RON kinase suggests an intramolecular autophosphorylation hypothesis., Wang J, Steinbacher S, Augustin M, Schreiner P, Epstein D, Mulvihill MJ, Crew AP, Biochemistry. 2010 Sep 21;49(37):7972-4. PMID:20726546
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3pls.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3PLS
  • CSU: Contacts of Structural Units for 3PLS
  • Structure Factors (148 Kb)
  • Retrieve 3PLS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PLS from S2C, [Save to disk]
  • Re-refined 3pls structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PLS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PLS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PLS, from MSDmotif at EBI
  • Fold representative 3pls from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pls_A] [3pls]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3PLS with the sequences similar proteins can be viewed for 3PLS's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3PLS
  • Community annotation for 3PLS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science