3PLS	Transferase	date	Nov 15, 2010
title	Ron In Complex With Ligand Amp-Pnp
authors	J.Wang, S.Steinbacher, M.Augustin, P.Schreiner, D.Epstein, M.J.Mu A.P.Crew
compound		source
Molecule: Macrophage-Stimulating Protein Receptor Chain: A Fragment: Ron Kinase Domain Residues 1060-1357 Synonym: Msp Receptor, Cdw136, Protein-Tyrosine Kinase 8, P Macrophage-Stimulating Protein Receptor Beta Chain; Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mst1r, Ptk8, Ron Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 41	R_factor 0.231 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.631 98.631 45.297 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.24 Å
ligand	ANP, MG	enzyme	Transferase E.C.2.7.10.1 BRENDA
Primary reference	The crystal structure of a constitutively active mutant RON kinase suggests an intramolecular autophosphorylation hypothesis., Wang J, Steinbacher S, Augustin M, Schreiner P, Epstein D, Mulvihill MJ, Crew AP, Biochemistry. 2010 Sep 21;49(37):7972-4. PMID:20726546

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (3pls.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 3PLS CSU: Contacts of Structural Units for 3PLS Structure Factors (148 Kb) Retrieve 3PLS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PLS from S2C, [Save to disk] Re-refined 3pls structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PLS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3PLS

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3PLS, from MSDmotif at EBI Fold representative 3pls from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pls_A] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3PLS with the sequences similar proteins can be viewed for 3PLS's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 3PLS

Community annotation for 3PLS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---