3PM0 Oxidoreductase date Nov 15, 2010
title Structural Characterization Of The Complex Between Alpha- Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
authors A.Wang, C.D.Stout, E.F.Johnson
compound source
Molecule: Cytochrome P450 1b1
Chain: A
Synonym: Cypib1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp1b1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcwori
symmetry Space Group: P 21 21 2
R_factor 0.235 R_Free 0.278
length a length b length c angle alpha angle beta angle gamma
84.170 103.980 62.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand BHF, HEM BindingDB enzyme Oxidoreductase E.C. BRENDA

Primary referenceStructural characterization of the complex between {alpha}-naphthoflavone and human cytochrome P450 1B1., Wang A, Savas U, Stout CD, Johnson EF, J Biol Chem. 2010 Dec 8. PMID:21147782
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3pm0.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 3PM0
  • CSU: Contacts of Structural Units for 3PM0
  • Structure Factors (126 Kb)
  • Retrieve 3PM0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PM0 from S2C, [Save to disk]
  • Re-refined 3pm0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PM0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PM0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PM0, from MSDmotif at EBI
  • Fold representative 3pm0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pm0] [3pm0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3PM0
  • Community annotation for 3PM0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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