3PMA	Hydrolase Hydrolase Inhibitor	date	Nov 16, 2010
title	2.2 Angstrom Crystal Structure Of The Complex Between Bovine And Sucrose Octasulfate
authors	H.T.Wright, J.N.Scarsdale, B.J.Desai
compound		source
Molecule: Thrombin Light Chain Chain: A, C Fragment: Bovine Thrombin Light Chain Residues 336-364 Ec: 3.4.21.5		Organism_scientific: Bos Taurus Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow Organism_taxid: 9913
Molecule: Thrombin Heavy Chain Chain: B, D Ec: 3.4.21.5		Organism_scientific: Bos Taurus Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow Organism_taxid: 9913
symmetry	Space Group: P 43 21 2	R_factor 0.204 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.562 87.562 191.990 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CIT, GU4, NA, YYJ	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Interaction of Thrombin with Sucrose Octasulfate., Desai BJ, Boothello RS, Mehta AY, Scarsdale JN, Wright HT, Desai UR, Biochemistry. 2011 Jul 18. PMID:21736375

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk] Biological Unit Coordinates (3pma.pdb1.gz) 90 Kb Biological Unit Coordinates (3pma.pdb2.gz) 96 Kb Biological Unit Coordinates (3pma.pdb3.gz) 365 Kb Biological Unit Coordinates (3pma.pdb4.gz) 184 Kb LPC: Ligand-Protein Contacts for 3PMA CSU: Contacts of Structural Units for 3PMA Structure Factors (290 Kb) Retrieve 3PMA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PMA from S2C, [Save to disk] Re-refined 3pma structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PMA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PMA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PMA, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pma_A] [3pma_B] [3pma_C] [3pma_D] [3pma] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3PMA: [Tryp_SPc ] by SMART

Other resources with information on 3PMA

Community annotation for 3PMA at PDBWiki (http://pdbwiki.org)

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