3PMI	Protein Binding	date	Nov 17, 2010
title	Pwwp Domain Of Human Mutated Melanoma-Associated Antigen 1
authors	R.Lam, H.Zeng, P.Loppnau, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, H.Wu, Structural Genomics Cons (Sgc)
compound		source
Molecule: Pwwp Domain-Containing Protein Mum1 Chain: A, B, C, D Fragment: Pwwp Domain (Unp Residues 405-538) Synonym: Mutated Melanoma-Associated Antigen 1, Mum-1, Prot Expandere; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Expand1, Mum1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-(De3)-V2r-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Mhl
symmetry	Space Group: P 21 21 21	R_factor 0.228 R_Free 0.304
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.044 57.716 187.072 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.82 Å
ligand	MSE, PEG, SO4, UNL	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural and Histone Binding Ability Characterizations of Human PWWP Domains., Wu H, Zeng H, Lam R, Tempel W, Amaya MF, Xu C, Dombrovski L, Qiu W, Wang Y, Min J, PLoS One. 2011;6(6):e18919. Epub 2011 Jun 20. PMID:21720545

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk] Biological Unit Coordinates (3pmi.pdb1.gz) 42 Kb Biological Unit Coordinates (3pmi.pdb2.gz) 43 Kb Biological Unit Coordinates (3pmi.pdb3.gz) 43 Kb Biological Unit Coordinates (3pmi.pdb4.gz) 42 Kb Biological Unit Coordinates (3pmi.pdb5.gz) 164 Kb LPC: Ligand-Protein Contacts for 3PMI CSU: Contacts of Structural Units for 3PMI Structure Factors (406 Kb) Retrieve 3PMI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PMI from S2C, [Save to disk] Re-refined 3pmi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PMI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PMI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PMI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pmi_B] [3pmi_C] [3pmi] [3pmi_A] [3pmi_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3PMI: [PWWP ] by SMART

Other resources with information on 3PMI

Community annotation for 3PMI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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