3PMR Cell Adhesion date Nov 17, 2010
title Crystal Structure Of E2 Domain Of Human Amyloid Precursor-Li
authors S.Lee, Y.Xue, J.Hu, Y.Wang, X.Liu, B.Demeler, Y.Ha
compound source
Molecule: Amyloid-Like Protein 1
Chain: A, B
Fragment: E2 Domain (Unp Residues 285-499)
Synonym: Aplp, Aplp-1, C30
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aplp1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.885 81.269 89.670 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.11 Å
ligand PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe E2 Domains of APP and APLP1 Share a Conserved Mode of Dimerization., Lee S, Xue Y, Hu J, Wang Y, Liu X, Demeler B, Ha Y, Biochemistry. 2011 May 26. PMID:21574595
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]
  • Biological Unit Coordinates (3pmr.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 3PMR
  • CSU: Contacts of Structural Units for 3PMR
  • Structure Factors (456 Kb)
  • Retrieve 3PMR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PMR from S2C, [Save to disk]
  • Re-refined 3pmr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PMR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PMR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PMR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pmr] [3pmr_A] [3pmr_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3PMR
  • Community annotation for 3PMR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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