3POZ Transferase Transferase Inhibitor date Nov 23, 2010
title Egfr Kinase Domain Complexed With Tak-285
authors K.Aertgeerts, R.Skene, S.Sogabe
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Fragment: Residues 606-1022
Synonym: Proto-Oncogene C-Erbb-1, Receptor Tyrosine-Protein Erbb-1;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7118
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbacht
symmetry Space Group: P 21 21 21
R_factor 0.219 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.806 68.881 104.558 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand 03P, SO4 BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Analysis of the Mechanism of Inhibition and Allosteric Activation of the Kinase Domain of HER2 Protein., Aertgeerts K, Skene R, Yano J, Sang BC, Zou H, Snell G, Jennings A, Iwamoto K, Habuka N, Hirokawa A, Ishikawa T, Tanaka T, Miki H, Ohta Y, Sogabe S, J Biol Chem. 2011 May 27;286(21):18756-65. Epub 2011 Mar 30. PMID:21454582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (3poz.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 3POZ
  • CSU: Contacts of Structural Units for 3POZ
  • Structure Factors (365 Kb)
  • Retrieve 3POZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3POZ from S2C, [Save to disk]
  • Re-refined 3poz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3POZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3POZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3POZ, from MSDmotif at EBI
  • Fold representative 3poz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3poz] [3poz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3POZ: [TyrKc ] by SMART
  • Other resources with information on 3POZ
  • Community annotation for 3POZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science