3PP0 Transferase Transferase Inhibitor date Nov 23, 2010
title Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2)
authors R.J.Skene, K.Aertgeerts, S.Sogabe
compound source
Molecule: Receptor Tyrosine-Protein Kinase Erbb-2
Chain: A, B
Fragment: Kinase Domain, Residues 706-1009
Synonym: Metastatic Lymph Node Gene 19 Protein, Mln 19, Pro Oncogene Neu, Proto-Oncogene C-Erbb-2, Tyrosine Kinase-Type Surface Receptor Her2, P185erbb2;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erbb2, Her2, Mln19, Neu, Ngl
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7118
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.705 78.951 152.675 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand 03Q BindingDB enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Analysis of the Mechanism of Inhibition and Allosteric Activation of the Kinase Domain of HER2 Protein., Aertgeerts K, Skene R, Yano J, Sang BC, Zou H, Snell G, Jennings A, Iwamoto K, Habuka N, Hirokawa A, Ishikawa T, Tanaka T, Miki H, Ohta Y, Sogabe S, J Biol Chem. 2011 May 27;286(21):18756-65. Epub 2011 Mar 30. PMID:21454582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (3pp0.pdb1.gz) 100 Kb
  • Biological Unit Coordinates (3pp0.pdb2.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 3PP0
  • CSU: Contacts of Structural Units for 3PP0
  • Structure Factors (433 Kb)
  • Retrieve 3PP0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PP0 from S2C, [Save to disk]
  • Re-refined 3pp0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PP0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PP0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PP0, from MSDmotif at EBI
  • Fold representative 3pp0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pp0] [3pp0_B] [3pp0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3PP0 with the sequences similar proteins can be viewed for 3PP0's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3PP0
  • Community annotation for 3PP0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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