3PPA Hydrolase date Nov 24, 2010
title Structure Of The Dusp-Ubl Domains Of Usp15
authors J.R.Walker, A.E.Asinas, A.Dong, J.Weigelt, C.Bountra, A.M.Edwards C.H.Arrowsmith, S.Dhe-Paganon, Structural Genomics Consortium
compound source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 15
Chain: A
Fragment: Dusp And Ubl Domains (Unp Residues 6-223)
Synonym: Deubiquitinating Enzyme 15, Ubiquitin Thiolesteras Ubiquitin-Specific-Processing Protease 15, Unph-2, Unph4;
Ec: 3.4.19.12
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa0529, Usp15
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-V2r
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic
symmetry Space Group: P 62 2 2
R_factor 0.262 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.170 74.170 194.520 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.35 Å
ligand CIT, SO4 enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3ppa.pdb1.gz) 277 Kb
  • LPC: Ligand-Protein Contacts for 3PPA
  • CSU: Contacts of Structural Units for 3PPA
  • Structure Factors (278 Kb)
  • Retrieve 3PPA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PPA from S2C, [Save to disk]
  • Re-refined 3ppa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PPA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PPA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PPA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ppa] [3ppa_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PPA: [DUSP ] by SMART
    • Other resources with information on 3PPA
  • Community annotation for 3PPA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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