OCA Atlas for 3PQY

3PQY

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
L, B, G, Q

Primary reference

Structural basis for enabling T-cell receptor diversity within biased virus-specific CD8+ T-cell responses., Day EB, Guillonneau C, Gras S, La Gruta NL, Vignali DA, Doherty PC, Purcell AW, Rossjohn J, Turner SJ, Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9536-41. Epub 2011 May 23. PMID:21606376

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (527 Kb) [Save to disk]

Biological Unit Coordinates (3pqy.pdb1.gz) 138 Kb

Biological Unit Coordinates (3pqy.pdb2.gz) 137 Kb

Biological Unit Coordinates (3pqy.pdb3.gz) 136 Kb

Biological Unit Coordinates (3pqy.pdb4.gz) 135 Kb

CSU: Contacts of Structural Units for 3PQY

Structure Factors (743 Kb)

Retrieve 3PQY in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3PQY from S2C, [Save to disk]

Re-refined 3pqy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PQY in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3pqy] [3pqy_A] [3pqy_B] [3pqy_C] [3pqy_D] [3pqy_E] [3pqy_F] [3pqy_G] [3pqy_H] [3pqy_I] [3pqy_J] [3pqy_K] [3pqy_L] [3pqy_M] [3pqy_N] [3pqy_O] [3pqy_P] [3pqy_Q] [3pqy_R] [3pqy_S] [3pqy_T]

SWISS-PROT database:

Domains found in 3PQY: [IG_like] [IGc1] [IGc2 ] by SMART

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