3PS3	Hydrolase Antibiotic	date	Nov 30, 2010
title	Crystal Structure Of The Escherichia Coli Lpxclpc-053 Compl
authors	C.J.Lee, P.Zhou
compound		source
Molecule: Udp-3-O-[3-Hydroxymyristoyl] N-Acetylglucosamine Deacetylase; Chain: A Fragment: Unp Residues 1-300 Synonym: Udp-3-O-Acyl-Glcnac Deacetylase Ec: 3.5.1.- Engineered: Yes		Organism_scientific: Escherichia Coli Ihe3034 Organism_taxid: 714962 Strain: Ihe3034 Expec Gene: Ecok1_0097, Enva, Lpxc Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21b
symmetry	Space Group: P 61	R_factor 0.195 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 107.745 107.745 53.509 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	DMS, L53, SO4, UKW, ZN	enzyme	Hydrolase E.C.3.5.1 BRENDA
Gene	ECOK1
Gene Ontology	Chain Function Process Component A
Primary reference	Syntheses, structures and antibiotic activities of LpxC inhibitors based on the diacetylene scaffold., Liang X, Lee CJ, Chen X, Chung HS, Zeng D, Raetz CR, Li Y, Zhou P, Toone EJ, Bioorg Med Chem. 2011 Jan 15;19(2):852-60. Epub 2010 Dec 9. PMID:21194954

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (3ps3.pdb1.gz) 96 Kb LPC: Ligand-Protein Contacts for 3PS3 CSU: Contacts of Structural Units for 3PS3 Structure Factors (229 Kb) Retrieve 3PS3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PS3 from S2C, [Save to disk] Re-refined 3ps3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PS3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PS3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PS3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ps3] [3ps3_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3PS3

Community annotation for 3PS3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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