3PS4 Transferase date Nov 30, 2010
title Pdz Domain From Human Microtubule-Associated Serinethreonin Kinase 1
authors E.Ugochukwu, J.Wang, T.Krojer, J.R.C.Muniz, R.Sethi, A.C.W.Pike, A E.Salah, R.Cocking, P.Savitsky, D.A.Doyle, F.Von Delft, C.Bountr C.H.Arrowsmith, J.Weigelt, A.Edwards, S.Knapp, J.M.Elkins, Struc Genomics Consortium (Sgc)
compound source
Molecule: Microtubule-Associated Serinethreonine-Protein K
Chain: A, B, C, D
Synonym: Syntrophin-Associated Serinethreonine-Protein Kin
Ec: 2.7.11.1
Engineered: Yes
Fragment: Unp Residues 965-1057
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mast1, Kiaa0973
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.100 79.326 82.856 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand EDO, IMD enzyme Transferase E.C.2.7.11.1 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (3ps4.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (3ps4.pdb2.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3PS4
  • CSU: Contacts of Structural Units for 3PS4
  • Structure Factors (1796 Kb)
  • Retrieve 3PS4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PS4 from S2C, [Save to disk]
  • Re-refined 3ps4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PS4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PS4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PS4, from MSDmotif at EBI
  • Fold representative 3ps4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ps4] [3ps4_C] [3ps4_D] [3ps4_B] [3ps4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PS4: [PDZ ] by SMART
  • Other resources with information on 3PS4
  • Community annotation for 3PS4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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