3PSD	Transferase Transferase Inhibitor	date	Dec 01, 2010
title	Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
authors	T.Morales, G.P.A.Vigers, B.J.Brandhuber
compound		source
Molecule: B-Raf Proto-Oncogene Serinethreonine-Protein Kin Chain: A, B Fragment: Unp Residues 432-726 Synonym: P94, V-Raf Murine Sarcoma Viral Oncogene Homolog B Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Braf, Braf1, Rafb1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 41 21 2	R_factor 0.277 R_Free 0.335
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.980 94.980 161.730 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.60 Å
ligand	SM7	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Non-oxime pyrazole based inhibitors of B-Raf kinase., Newhouse BJ, Hansen JD, Grina J, Welch M, Topalov G, Littman N, Callejo M, Martinson M, Galbraith S, Laird ER, Brandhuber BJ, Vigers G, Morales T, Woessner R, Randolph N, Lyssikatos J, Olivero A, Bioorg Med Chem Lett. 2010 Dec 17. PMID:21536432

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk] Biological Unit Coordinates (3psd.pdb1.gz) 42 Kb Biological Unit Coordinates (3psd.pdb2.gz) 42 Kb LPC: Ligand-Protein Contacts for 3PSD CSU: Contacts of Structural Units for 3PSD Structure Factors (74 Kb) Retrieve 3PSD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3PSD from S2C, [Save to disk] Re-refined 3psd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3PSD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3PSD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3PSD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3psd_A] [3psd] [3psd_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3PSD: [STYKc ] by SMART

Other resources with information on 3PSD

Community annotation for 3PSD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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