3PTG Transferase Transferase Inhibitor date Dec 02, 2010
title Design And Synthesis Of A Novel, Orally Efficacious Tri-Subs Thiophene Based Jnk Inhibitor
authors S.Bowers, A.P.Truong, J.Neitz, M.Neitzel, G.D.Probst, R.K.Hom, A.W H.L.Sham, G.Toth, H.Pan, N.Yao, D.R.Artis, E.F.Brigham, K.P.Quinn K.Powell, L.Ruslim, F.Bard, T.A.Yednock, I.Griswold-Prenner
compound source
Molecule: Mitogen-Activated Protein Kinase 10
Chain: A
Fragment: Unp Residues 40-401
Synonym: Map Kinase 10, Mapk 10, Map Kinase P49 3f12, Stres Activated Protein Kinase Jnk3, C-Jun N-Terminal Kinase 3;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk10, Jnk3, Jnk3a, Prkm10
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: C-Jun-Amino-Terminal Kinase-Interacting Protein 1
Chain: J
Fragment: Unp Residues 157-167
Synonym: Jip-1, Jnk-Interacting Protein 1, Islet-Brain 1, I Map Kinase Scaffold Protein 1, Mitogen-Activated Protein Ki Interacting Protein 1;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.244 R_Free 0.316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.772 80.434 83.450 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.43 Å
ligand 932 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and synthesis of a novel, orally active, brain penetrant, tri-substituted thiophene based JNK inhibitor., Bowers S, Truong AP, Neitz RJ, Neitzel M, Probst GD, Hom RK, Peterson B, Galemmo RA Jr, Konradi AW, Sham HL, Toth G, Pan H, Yao N, Artis DR, Brigham EF, Quinn KP, Sauer JM, Powell K, Ruslim L, Ren Z, Bard F, Yednock TA, Griswold-Prenner I, Bioorg Med Chem Lett. 2011 Jan 20. PMID:21316234
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3ptg.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3PTG
  • CSU: Contacts of Structural Units for 3PTG
  • Structure Factors (206 Kb)
  • Retrieve 3PTG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PTG from S2C, [Save to disk]
  • Re-refined 3ptg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PTG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PTG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PTG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ptg] [3ptg_A] [3ptg_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PTG: [S_TKc ] by SMART
  • Other resources with information on 3PTG
  • Community annotation for 3PTG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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