3PVN Immune System date Dec 07, 2010
title Triclinic Form Of Human C-Reactive Protein In Complex With Z
authors C.Guillon, U.Mavoungou Bigouagou, P.Jeannin, Y.Delneste, P.Gouet
compound source
Molecule: C-Reactive Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Fragment: Unp Residues 19-224
Synonym: C-Reactive Protein(1-205)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Crp, Ptx1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.176 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.300 96.400 160.400 79.90 77.10 69.40
method X-Ray Diffractionresolution 1.98 Å
ligand CA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G


Primary referenceA Staggered Decameric Assembly of Human C-Reactive Protein Stabilized by Zinc Ions Revealed by X-ray Crystallography., Guillon C, Bigouagou UM, Folio C, Jeannin P, Delneste Y, Gouet P, Protein Pept Lett. 2014;22(3):248-55. PMID:25552313
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (731 Kb) [Save to disk]
  • Biological Unit Coordinates (3pvn.pdb1.gz) 189 Kb
  • Biological Unit Coordinates (3pvn.pdb2.gz) 188 Kb
  • Biological Unit Coordinates (3pvn.pdb3.gz) 189 Kb
  • Biological Unit Coordinates (3pvn.pdb4.gz) 186 Kb
  • LPC: Ligand-Protein Contacts for 3PVN
  • CSU: Contacts of Structural Units for 3PVN
  • Structure Factors (2378 Kb)
  • Retrieve 3PVN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PVN from S2C, [Save to disk]
  • Re-refined 3pvn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PVN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PVN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PVN, from MSDmotif at EBI
  • Fold representative 3pvn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pvn_P] [3pvn_H] [3pvn_C] [3pvn_J] [3pvn_M] [3pvn_O] [3pvn_Q] [3pvn_T] [3pvn_R] [3pvn_G] [3pvn_I] [3pvn_S] [3pvn_B] [3pvn_N] [3pvn_E] [3pvn_A] [3pvn_D] [3pvn_L] [3pvn] [3pvn_F] [3pvn_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PVN: [PTX ] by SMART
  • Other resources with information on 3PVN
  • Community annotation for 3PVN at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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