3PXJ Hydrolase date Dec 10, 2010
title Tandem Ig Repeats Of Dlar
authors B.H.Biersmith, S.Bouyain
compound source
Molecule: Tyrosine-Protein Phosphatase Lar
Chain: A, B, C, D
Fragment: Ig Domains 1 And 2 (Unp Residues 32-237)
Synonym: Protein-Tyrosine-Phosphate Phosphohydrolase, Dlar
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: Lar, Cg10443
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Origami 2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32
symmetry Space Group: P 1 21 1
R_factor 0.223 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.957 77.513 81.726 90.00 101.08 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Primary referenceThe Immunoglobulin-like Domains 1 and 2 of the Protein Tyrosine Phosphatase LAR Adopt an Unusual Horseshoe-like Conformation., Biersmith BH, Hammel M, Geisbrecht ER, Bouyain S, J Mol Biol. 2011 May 13;408(4):616-27. Epub 2011 Mar 21. PMID:21402080
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (3pxj.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (3pxj.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (3pxj.pdb3.gz) 63 Kb
  • Biological Unit Coordinates (3pxj.pdb4.gz) 49 Kb
  • CSU: Contacts of Structural Units for 3PXJ
  • Structure Factors (489 Kb)
  • Retrieve 3PXJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PXJ from S2C, [Save to disk]
  • Re-refined 3pxj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PXJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PXJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PXJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pxj_C] [3pxj_A] [3pxj_B] [3pxj_D] [3pxj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PXJ: [IGc2 ] by SMART
  • Other resources with information on 3PXJ
  • Community annotation for 3PXJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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