3PYK Lyase Lyase Inhibitor date Dec 13, 2010
title Human Carbonic Anhydrase II As Host For Pianostool Complexes Sulfonamide Anchor
authors T.Heinisch, T.Schirmer
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II, Carbonic Anhydrase C, Ca Carbonic Anhydrase II, Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
symmetry Space Group: P 1 21 1
R_factor 0.128 R_Free 0.165
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.099 41.493 72.382 90.00 104.33 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand MMC, SO4, SRX, ZN BindingDB enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHuman Carbonic Anhydrase II as a host for piano-stool complexes bearing a sulfonamide anchor., Monnard FW, Heinisch T, Nogueira ES, Schirmer T, Ward TR, Chem Commun (Camb). 2011 Aug 7;47(29):8238-40. Epub 2011 Jun 27. PMID:21706094
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (3pyk.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 3PYK
  • CSU: Contacts of Structural Units for 3PYK
  • Structure Factors (2572 Kb)
  • Retrieve 3PYK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PYK from S2C, [Save to disk]
  • Re-refined 3pyk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PYK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PYK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PYK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pyk_A] [3pyk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PYK: [Carb_anhydrase ] by SMART
  • Other resources with information on 3PYK
  • Community annotation for 3PYK at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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