3PZ7 Signaling Protein date Dec 14, 2010
title Crystal Structure Of Ccd1-Dix Domain
authors Y.T.Liu, J.W.Wang, L.Chen, J.W.Wu
compound source
Molecule: Dixin
Chain: A
Fragment: Dix Domain
Synonym: Ccd1, Coiled-Coil Protein Dix1, Dix Domain-Contain Protein 1;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex
symmetry Space Group: P 61 2 2
R_factor 0.233 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.576 62.576 77.722 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.44 Å
ligand EDO, MSE enzyme
note 3PZ7 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (3pz7.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 3PZ7
  • CSU: Contacts of Structural Units for 3PZ7
  • Structure Factors (74 Kb)
  • Retrieve 3PZ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PZ7 from S2C, [Save to disk]
  • Re-refined 3pz7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3PZ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3PZ7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3PZ7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pz7_A] [3pz7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PZ7: [DAX ] by SMART
    • Other resources with information on 3PZ7
  • Community annotation for 3PZ7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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