3PZE Transferase Transferase Inhibitor date Dec 14, 2010
title Jnk1 In Complex With Inhibitor
authors Y.Xue
compound source
Molecule: Mitogen-Activated Protein Kinase 8
Chain: A
Fragment: Unp Residues 7-364
Synonym: Map Kinase 8, Mapk 8, Jnk-46, Stress-Activated Pro Kinase 1, Stress-Activated Protein Kinase Jnk1, C-Jun N-Ter Kinase 1;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk8, Jnk1, Prkm8, Sapk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.204 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.586 71.378 106.731 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CFK, SO4 enzyme Transferase E.C.2.7.11.24 BRENDA
Primary referenceDiscovery of Checkpoint Kinase Inhibitor (S)-5-(3-fluorophenyl)-N-(piperidin-3-yl)-3-ureidothiophene-2-carboxamide (AZD7762) by Structure Based Design and Optimization of Thiophene Carboxamide Ureas., Oza VB, Ashwell S, Almeida L, Brassil P, Breed J, Deng C, Gero T, Grondine M, Horn C, Ioannidis S, Liu D, Lyne PD, Newcombe N, Pass M, Read J, Ready S, Rowsell S, Su M, Toader D, Vasbinder M, Yu D, Yu Y, Xue Y, Zabludoff S, Janetka J, J Med Chem. 2012 May 2. PMID:22551018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3pze.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3PZE
  • CSU: Contacts of Structural Units for 3PZE
  • Structure Factors (1294 Kb)
  • Retrieve 3PZE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3PZE from S2C, [Save to disk]
  • Re-refined 3pze structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3PZE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3PZE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3PZE, from MSDmotif at EBI
  • Fold representative 3pze from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3pze] [3pze_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3PZE: [S_TKc ] by SMART
  • Alignments of the sequence of 3PZE with the sequences similar proteins can be viewed for 3PZE's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3PZE
  • Community annotation for 3PZE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science