3Q1D	Ligase	date	Dec 17, 2010
title	The B-Box Domain Of Trim54
authors	J.R.Walker, L.Yermekbayeva, F.Mackenzie, A.Dong, J.Weigelt, C.Bou A.M.Edwards, C.H.Arrowsmith, S.Dhe-Paganon
compound		source
Molecule: Tripartite Motif-Containing Protein 54 Chain: A Fragment: B-Box Domain, Unp Residues 122-168 Synonym: Muscle-Specific Ring Finger Protein, Murf, Muscle- Ring Finger Protein 3, Murf-3, Murf3, Ring Finger Protein 3 Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Murf, Murf3, Rnf30, Trim54 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Mhl
symmetry	Space Group: P 62 2 2	R_factor 0.182 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.276 47.276 87.047 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	ZN	enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk] Biological Unit Coordinates (3q1d.pdb1.gz) 33 Kb LPC: Ligand-Protein Contacts for 3Q1D CSU: Contacts of Structural Units for 3Q1D Structure Factors (50 Kb) Retrieve 3Q1D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3Q1D from S2C, [Save to disk] Re-refined 3q1d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3Q1D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3Q1D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3Q1D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3q1d] [3q1d_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3Q1D: [BBOX ] by SMART

Other resources with information on 3Q1D

Community annotation for 3Q1D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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