3Q2U Membrane Protein date Dec 20, 2010
title Structure Of Human Glioma Pathogenesis-Related Protein 1 Rev Unique Loops And Surface Motifs.
authors O.A.Asojo
compound source
Molecule: Glioma Pathogenesis-Related Protein 1
Chain: A
Fragment: Unp Residues 22-220
Synonym: Glipr 1, Protein Rtvp-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Glipr, Glipr1, Rtvp1, Synthesized
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: X33
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppiczalpha
symmetry Space Group: P 21 21 2
R_factor 0.134 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.077 79.532 38.849 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural studies of human glioma pathogenesis-related protein 1., Asojo OA, Koski RA, Bonafe N, Acta Crystallogr D Biol Crystallogr. 2011 Oct;67(Pt 10):847-55. Epub 2011, Sep 8. PMID:21931216
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (3q2u.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 3Q2U
  • CSU: Contacts of Structural Units for 3Q2U
  • Structure Factors (404 Kb)
  • Retrieve 3Q2U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q2U from S2C, [Save to disk]
  • Re-refined 3q2u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q2U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q2U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3Q2U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q2u_A] [3q2u]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3Q2U: [SCP ] by SMART
  • Other resources with information on 3Q2U
  • Community annotation for 3Q2U at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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