3Q4U Transferase date Dec 24, 2010
title Crystal Structure Of The Acvr1 Kinase Domain In Complex With 193189
authors A.Chaikuad, C.Sanvitale, C.D.O.Cooper, P.Mahajan, N.Daga, K.Petri I.Alfano, O.Gileadi, O.Fedorov, C.K.Allerston, T.Krojer, M.Vollm Delft, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, C.Bountra, A.Bull Structural Genomics Consortium (Sgc)
compound source
Molecule: Activin Receptor Type-1
Chain: A, B, C, D
Fragment: Kinase Domain, Unp Residues 201-499
Synonym: Activin Receptor Type I, Actr-I, Activin Receptor- Kinase 2, Alk-2, Serinethreonine-Protein Kinase Receptor R Tgf-B Superfamily Receptor Type I, Tsr-I;
Ec: 2.7.11.30
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acvr1, Acvrlk2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfb-Lic-Bse
symmetry Space Group: P 1 21 1
R_factor 0.163 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.600 98.700 83.850 90.00 117.42 90.00
method X-Ray Diffractionresolution 1.82 Å
ligand EDO, FLC, LDN enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA new class of small molecule inhibitor of BMP signaling., Sanvitale CE, Kerr G, Chaikuad A, Ramel MC, Mohedas AH, Reichert S, Wang Y, Triffitt JT, Cuny GD, Yu PB, Hill CS, Bullock AN, PLoS One. 2013 Apr 30;8(4):e62721. doi: 10.1371/journal.pone.0062721. Print 2013. PMID:23646137
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (424 Kb) [Save to disk]
  • Biological Unit Coordinates (3q4u.pdb1.gz) 209 Kb
  • Biological Unit Coordinates (3q4u.pdb2.gz) 211 Kb
  • Biological Unit Coordinates (3q4u.pdb3.gz) 212 Kb
  • LPC: Ligand-Protein Contacts for 3Q4U
  • CSU: Contacts of Structural Units for 3Q4U
  • Structure Factors (1635 Kb)
  • Retrieve 3Q4U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q4U from S2C, [Save to disk]
  • Re-refined 3q4u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q4U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q4U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3Q4U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q4u_C] [3q4u_B] [3q4u_D] [3q4u_A] [3q4u]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3Q4U: [STYKc ] by SMART
  • Other resources with information on 3Q4U
  • Community annotation for 3Q4U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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