3Q6M Chaperone date Jan 03, 2011
title Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group
authors C.C.Lee, T.W.Lin, T.P.Ko, A.H.J.Wang
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A, B, C
Fragment: Middle And C-Terminal Domain, Unp Residues 293-73
Synonym: Hsp90, Heat Shock 86 Kda, Hsp 86, Hsp86, Renal Car Antigen Ny-Ren-38;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: C 2 2 21
R_factor 0.209 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.702 304.553 87.624 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand SO4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (410 Kb) [Save to disk]
  • Biological Unit Coordinates (3q6m.pdb1.gz) 798 Kb
  • LPC: Ligand-Protein Contacts for 3Q6M
  • CSU: Contacts of Structural Units for 3Q6M
  • Structure Factors (634 Kb)
  • Retrieve 3Q6M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q6M from S2C, [Save to disk]
  • Re-refined 3q6m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q6M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q6M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3Q6M, from MSDmotif at EBI
  • Fold representative 3q6m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q6m_C] [3q6m_A] [3q6m_B] [3q6m]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3Q6M with the sequences similar proteins can be viewed for 3Q6M's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3Q6M
  • Community annotation for 3Q6M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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