3Q7P Signaling Protein date Jan 05, 2011
title Crystal Structure Of Rad G-Domain-Gtp Analog Complex
authors Y.Sasson, L.Navon-Perry, J.A.Hirsch
compound source
Molecule: Gtp-Binding Protein Rad
Chain: A, B
Fragment: G-Domain, Residues 90-255
Synonym: Rad1, Ras Associated With Diabetes
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rrad, Rad
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
symmetry Space Group: P 31
R_factor 0.212 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.628 38.628 153.456 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand GNP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRGK Family G-Domain:GTP Analog Complex Structures and Nucleotide-Binding Properties., Sasson Y, Navon-Perry L, Huppert D, Hirsch JA, J Mol Biol. 2011 Aug 29. PMID:21903096
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3q7p.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (3q7p.pdb2.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 3Q7P
  • CSU: Contacts of Structural Units for 3Q7P
  • Structure Factors (59 Kb)
  • Retrieve 3Q7P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q7P from S2C, [Save to disk]
  • Re-refined 3q7p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q7P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q7P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3Q7P, from MSDmotif at EBI
  • Fold representative 3q7p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q7p_B] [3q7p] [3q7p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3Q7P: [small_GTPase ] by SMART
  • Other resources with information on 3Q7P
  • Community annotation for 3Q7P at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science