3Q91 Hydrolase date Jan 07, 2011
title Crystal Structure Of Human Uridine Diphosphate Glucose Pyrop (Nudt14)
authors L.Tresaugues, M.I.Siponen, C.H.Arrowsmith, H.Berglund, C.Bountra R.Collins, A.M.Edwards, T.Ekblad, S.Flodin, A.Flores, S.Graslund M.Hammarstrom, I.Johansson, T.Karlberg, S.Kol, T.Kotenyova, E.Kouznetsova, M.Moche, T.Nyman, C.Persson, H.Schuler, P.Schutz, A.G.Thorsell, S.Van Der Berg, E.Wahlberg, J.Weigelt, M.Welin, P. Structural Genomics Consortium (Sgc)
compound source
Molecule: Uridine Diphosphate Glucose Pyrophosphatase
Chain: A, C, B, D
Fragment: Unp Residues 28-222
Synonym: Udpg Pyrophosphatase, Ugppase, Nucleoside Diphosph Moiety X Motif 14, Nudix Motif 14;
Ec: 3.6.1.45
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudt14, Ugpp
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 2 21 21
R_factor 0.228 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.040 106.240 106.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand
enzyme Hydrolase E.C.3.6.1.45 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (200 Kb) [Save to disk]
  • Biological Unit Coordinates (3q91.pdb1.gz) 93 Kb
  • Biological Unit Coordinates (3q91.pdb2.gz) 99 Kb
  • CSU: Contacts of Structural Units for 3Q91
  • Structure Factors (1802 Kb)
  • Retrieve 3Q91 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3Q91 from S2C, [Save to disk]
  • Re-refined 3q91 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3Q91 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3Q91
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3Q91, from MSDmotif at EBI
  • Fold representative 3q91 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3q91_D] [3q91_A] [3q91_B] [3q91] [3q91_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3Q91
  • Community annotation for 3Q91 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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