3QC8 Protein Binding date Jan 15, 2011
title Crystal Structure Of Faf1 Ubx Domain In Complex With P97vcp Reveals The Conserved Fcisp Touch-Turn Motif Of Ubx Domain Conformational Change
authors K.H.Kim, W.Kang, S.W.Suh, J.K.Yang
compound source
Molecule: Transitional Endoplasmic Reticulum Atpase
Chain: A
Fragment: N Domain
Synonym: Ter Atpase, 15s Mg(2+)-Atpase P97 Subunit, Valosin Containing Protein, Vcp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vcp
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fas-Associated Factor 1
Chain: B
Fragment: Ubx Domain
Synonym: Hfaf1, Ubx Domain-Containing Protein 12, Ubx Domai Containing Protein 3a;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Faf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.216 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.070 72.740 130.590 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Primary referenceCrystal structure of FAF1 UBX domain in complex with p97/VCP N domain reveals a conformational change in the conserved FcisP touch-turn motif of UBX domain., Kim KH, Kang W, Suh SW, Yang JK, Proteins. 2011 Aug;79(8):2583-7. doi: 10.1002/prot.23073. PMID:21739474
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3qc8.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 3QC8
  • Structure Factors (213 Kb)
  • Retrieve 3QC8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QC8 from S2C, [Save to disk]
  • Re-refined 3qc8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QC8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QC8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QC8, from MSDmotif at EBI
  • Fold representative 3qc8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qc8_A] [3qc8_B] [3qc8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3QC8: [CDC48_2] [CDC48_N] [UBX ] by SMART
  • Other resources with information on 3QC8
  • Community annotation for 3QC8 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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