3QFC	Oxidoreductase	date	Jan 21, 2011
title	Crystal Structure Of Human Nadph-Cytochrome P450 (V492e Muta
authors	C.Xia, C.Marohnic, S.P.Panda, B.S.Masters, J.J.P.Kim
compound		source
Molecule: Nadph--Cytochrome P450 Reductase Chain: A, B Fragment: Unp Residues 64-677 Synonym: Cpr, P450r Ec: 1.6.2.4 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Por, Cypor Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a-Wt Cypor
symmetry	Space Group: P 21 21 21	R_factor 0.232 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.716 118.508 155.360 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	CA, FAD, FMN, NAP	enzyme	Oxidoreductase E.C.1.6.2.4 BRENDA
Gene Ontology	Chain Function Process Component A, B NADPH-hemoprotein reductase ... cytochrome-b5 reductase acti... protein binding electron carrier activity FMN binding oxidoreductase activity hydrolase activity enzyme binding iron-cytochrome-c reductase ... flavin adenine dinucleotide ... NADP binding regulation of growth plate c... response to nutrient carnitine metabolic process flavonoid metabolic process internal peptidyl-lysine ace... fatty acid oxidation positive regulation of chond... positive regulation of monoo... response to drug negative regulation of apopt... negative regulation of cyste... nitrate catabolic process positive regulation of chole... positive regulation of smoot... nitric oxide catabolic proce... oxidation-reduction process negative regulation of lipas... demethylation cellular response to gonadot... cellular response to follicl... cellular response to peptide... positive regulation of stero... regulation of cholesterol me... cellular organofluorine meta... mitochondrion endoplasmic reticulum endoplasmic reticulum membra... membrane intracellular membrane-bound...
Primary reference	Structural basis for human NADPH-cytochrome P450 oxidoreductase deficiency., Xia C, Panda SP, Marohnic CC, Martasek P, Masters BS, Kim JJ, Proc Natl Acad Sci U S A. 2011 Aug 16;108(33):13486-91. Epub 2011 Aug 1. PMID:21808038

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk] Biological Unit Coordinates (3qfc.pdb1.gz) 113 Kb Biological Unit Coordinates (3qfc.pdb2.gz) 104 Kb LPC: Ligand-Protein Contacts for 3QFC CSU: Contacts of Structural Units for 3QFC Structure Factors (801 Kb) Retrieve 3QFC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3QFC from S2C, [Save to disk] Re-refined 3qfc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3QFC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 3QFC

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3QFC, from MSDmotif at EBI Fold representative 3qfc from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3qfc_A] [3qfc_B] SWISS-PROT database: Domain organization of by SWISSPFAM Alignments of the sequence of 3QFC with the sequences similar proteins can be viewed for 3QFC's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.

Other resources with information on 3QFC

Community annotation for 3QFC at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---