3QH9 Structural Protein date Jan 25, 2011
title Human Liprin-Beta2 Coiled-Coil
authors R.L.Stafford, M.Tang, M.L.Phillips, J.U.Bowie
compound source
Molecule: Liprin-Beta-2
Chain: A
Fragment: Unp Residues 185-265
Synonym: Protein Tyrosine Phosphatase Receptor Type F Polyp Interacting Protein-Binding Protein 2, Ptprf-Interacting Pr Binding Protein 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppfibp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector_type: Pqe2
symmetry Space Group: C 2 2 21
R_factor 0.232 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.964 162.656 34.387 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand GOL, IOD, NH4 enzyme
Primary referenceCrystal structure of the central coiled-coil domain from human liprin-beta2., Stafford RL, Tang MY, Sawaya MR, Phillips ML, Bowie JU, Biochemistry. 2011 May 10;50(18):3807-15. Epub 2011 Apr 15. PMID:21462929
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (3qh9.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3QH9
  • CSU: Contacts of Structural Units for 3QH9
  • Structure Factors (41 Kb)
  • Retrieve 3QH9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QH9 from S2C, [Save to disk]
  • Re-refined 3qh9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QH9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QH9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QH9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qh9] [3qh9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QH9
  • Community annotation for 3QH9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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