3QHE Signaling Protein Splicing date Jan 25, 2011
title Crystal Structure Of The Complex Between The Armadillo Repea Of Adenomatous Polyposis Coli And The Tyrosine-Rich Domain
authors E.C.J.Morishita, K.Murayama, M.Kato-Murayama, Y.Ishizuku-Katsur Y.Tomabechi, T.Terada, N.Handa, M.Shirouzu, T.Akiyama, S.Yokoyam Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Adenomatous Polyposis Coli Protein
Chain: A, C
Fragment: Armadillo Repeat Domain, Residues 396-732
Synonym: Apc, Protein Apc, Deleted In Polyposis 2.5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell Free Synthsis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcr2.1
Other_details: E. Coli Cell-Free System

Molecule: Kh Domain-Containing, Rna-Binding, Signal Transdu Associated Protein 1;
Chain: B, D
Fragment: Tyrosine-Rich Domain, Residues 365-419
Synonym: Src-Associated In Mitosis 68 Kda Protein, Sam68, G Associated Tyrosine Phosphoprotein P62, P21 Ras Gtpase-Acti Protein-Associated P62, P68;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell Free Synthsis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcr2.1
Other_details: E. Coli Cell-Free System
symmetry Space Group: P 61
R_factor 0.187 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.223 148.223 63.379 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceCrystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of sam68., Morishita EC, Murayama K, Kato-Murayama M, Ishizuka-Katsura Y, Tomabechi Y, Hayashi T, Terada T, Handa N, Shirouzu M, Akiyama T, Yokoyama S, Structure. 2011 Oct 12;19(10):1496-508. PMID:22000517
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (3qhe.pdb1.gz) 111 Kb
  • Biological Unit Coordinates (3qhe.pdb2.gz) 109 Kb
  • CSU: Contacts of Structural Units for 3QHE
  • Structure Factors (1631 Kb)
  • Retrieve 3QHE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QHE from S2C, [Save to disk]
  • Re-refined 3qhe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QHE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QHE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QHE, from MSDmotif at EBI
  • Fold representative 3qhe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qhe_C] [3qhe_B] [3qhe_A] [3qhe_D] [3qhe]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3QHE with the sequences similar proteins can be viewed for 3QHE's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3QHE
  • Community annotation for 3QHE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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