3QHE Signaling Protein Splicing date Jan 25, 2011
title Crystal Structure Of The Complex Between The Armadillo Repea Of Adenomatous Polyposis Coli And The Tyrosine-Rich Domain
authors E.C.J.Morishita, K.Murayama, M.Kato-Murayama, Y.Ishizuku-Katsur Y.Tomabechi, T.Terada, N.Handa, M.Shirouzu, T.Akiyama, S.Yokoyam Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Adenomatous Polyposis Coli Protein
Chain: A, C
Fragment: Armadillo Repeat Domain, Residues 396-732
Synonym: Apc, Protein Apc, Deleted In Polyposis 2.5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell Free Synthsis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcr2.1
Other_details: E. Coli Cell-Free System

Molecule: Kh Domain-Containing, Rna-Binding, Signal Transdu Associated Protein 1;
Chain: B, D
Fragment: Tyrosine-Rich Domain, Residues 365-419
Synonym: Src-Associated In Mitosis 68 Kda Protein, Sam68, G Associated Tyrosine Phosphoprotein P62, P21 Ras Gtpase-Acti Protein-Associated P62, P68;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell Free Synthsis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcr2.1
Other_details: E. Coli Cell-Free System
symmetry Space Group: P 61
R_factor 0.187 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.223 148.223 63.379 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceCrystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of sam68., Morishita EC, Murayama K, Kato-Murayama M, Ishizuka-Katsura Y, Tomabechi Y, Hayashi T, Terada T, Handa N, Shirouzu M, Akiyama T, Yokoyama S, Structure. 2011 Oct 12;19(10):1496-508. PMID:22000517
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (3qhe.pdb1.gz) 111 Kb
  • Biological Unit Coordinates (3qhe.pdb2.gz) 109 Kb
  • CSU: Contacts of Structural Units for 3QHE
  • Structure Factors (1631 Kb)
  • Retrieve 3QHE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QHE from S2C, [Save to disk]
  • Re-refined 3qhe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QHE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QHE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QHE, from MSDmotif at EBI
  • Fold representative 3qhe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qhe_C] [3qhe_B] [3qhe_A] [3qhe_D] [3qhe]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QHE: [ARM ] by SMART
  • Other resources with information on 3QHE
  • Community annotation for 3QHE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science