3QIS Hydrolase Protein Binding date Jan 27, 2011
title Recognition Of The F&H Motif By The Lowe Syndrome Protein Oc
authors M.Pirruccello, L.E.Swan, E.Folta-Stogniew, P.De Camilli
compound source
Molecule: Inositol Polyphosphate 5-Phosphatase Ocrl-1
Chain: A
Fragment: Ash-Rhogap (Unp Residues 536-901)
Synonym: Lowe Oculocerebrorenal Syndrome Protein
Ec: 3.1.3.36
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Inpp5f, Ocrl, Ocrl1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p1

Molecule: Protein Fam109a
Chain: B
Fragment: F&H Motif (Unp Residues 223-235)
Synonym: Ses1
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 31 2 1
R_factor 0.195 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.478 73.478 145.294 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Hydrolase E.C.3.1.3.36 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRecognition of the F&H motif by the Lowe syndrome protein OCRL., Pirruccello M, Swan LE, Folta-Stogniew E, De Camilli P, Nat Struct Mol Biol. 2011 Jun 12. doi: 10.1038/nsmb.2071. PMID:21666675
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (3qis.pdb1.gz) 109 Kb
  • CSU: Contacts of Structural Units for 3QIS
  • Structure Factors (248 Kb)
  • Retrieve 3QIS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QIS from S2C, [Save to disk]
  • Re-refined 3qis structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QIS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QIS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QIS, from MSDmotif at EBI
  • Fold representative 3qis from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qis] [3qis_B] [3qis_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QIS: [RhoGAP ] by SMART
  • Other resources with information on 3QIS
  • Community annotation for 3QIS at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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