3QL9 Transcription Structural Protein date Feb 02, 2011
title Monoclinic Complex Structure Of Atrx Add Bound To Histone H3 Peptide
authors B.Xiang, H.Li
compound source
Molecule: Transcriptional Regulator Atrx
Chain: A
Fragment: N-Terminal Add Domain, Unp Residues 167-289
Synonym: Atp-Dependent Helicase Atrx, X-Linked Helicase II, Nuclear Protein, Xnp, Znf-Hx;
Ec: 3.6.4.12
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atrx, Rad54l, Xh2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p

Molecule: Peptide Of Histone H3.3
Chain: C
Fragment: K9 Trimethylated H3 N-Terminal Fragment, Unp Resi
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: C 1 2 1
R_factor 0.122 R_Free 0.131
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.719 39.452 41.057 90.00 111.24 90.00
method X-Ray Diffractionresolution 0.93 Å
ligand M3L, ZN enzyme Hydrolase E.C.3.6.4.12 BRENDA
note 3QL9 is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3ql9.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3QL9
  • CSU: Contacts of Structural Units for 3QL9
  • Structure Factors (909 Kb)
  • Retrieve 3QL9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QL9 from S2C, [Save to disk]
  • Re-refined 3ql9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QL9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QL9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QL9, from MSDmotif at EBI
  • Fold representative 3ql9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ql9] [3ql9_C] [3ql9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QL9: [RING ] by SMART
  • Other resources with information on 3QL9
  • Community annotation for 3QL9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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