3QL9 Transcription Structural Protein date Feb 02, 2011
title Monoclinic Complex Structure Of Atrx Add Bound To Histone H3 Peptide
authors B.Xiang, H.Li
compound source
Molecule: Transcriptional Regulator Atrx
Chain: A
Fragment: N-Terminal Add Domain, Unp Residues 167-289
Synonym: Atp-Dependent Helicase Atrx, X-Linked Helicase II, Nuclear Protein, Xnp, Znf-Hx;
Ec: 3.6.4.12
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atrx, Rad54l, Xh2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p

Molecule: Peptide Of Histone H3.3
Chain: C
Fragment: K9 Trimethylated H3 N-Terminal Fragment, Unp Resi
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: C 1 2 1
R_factor 0.122 R_Free 0.131
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.719 39.452 41.057 90.00 111.24 90.00
method X-Ray Diffractionresolution 0.93 Å
ligand M3L, ZN enzyme Hydrolase E.C.3.6.4.12 BRENDA
note 3QL9 is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3ql9.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3QL9
  • CSU: Contacts of Structural Units for 3QL9
  • Structure Factors (909 Kb)
  • Retrieve 3QL9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QL9 from S2C, [Save to disk]
  • Re-refined 3ql9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QL9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QL9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QL9, from MSDmotif at EBI
  • Fold representative 3ql9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ql9] [3ql9_C] [3ql9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QL9: [RING ] by SMART
  • Alignments of the sequence of 3QL9 with the sequences similar proteins can be viewed for 3QL9's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3QL9
  • Community annotation for 3QL9 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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