3QLA Transcription Structural Protein date Feb 02, 2011
title Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3 Pep
authors B.Xiang, H.Li
compound source
Molecule: Transcriptional Regulator Atrx
Chain: A, D
Fragment: N-Terminal Add Domain, Unp Residues 167-289
Synonym: Atp-Dependent Helicase Atrx, X-Linked Helicase II, Nuclear Protein, Xnp, Znf-Hx;
Ec: 3.6.4.12
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atrx, Rad54l, Xh2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p

Molecule: Peptide Of Histone H3.3
Chain: C, F
Fragment: N-Terminal Tail, Unp Residues 2-16
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 65
R_factor 0.157 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.709 66.709 131.641 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand K, M3L, ZN enzyme Hydrolase E.C.3.6.4.12 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (3qla.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (3qla.pdb2.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 3QLA
  • CSU: Contacts of Structural Units for 3QLA
  • Structure Factors (496 Kb)
  • Retrieve 3QLA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QLA from S2C, [Save to disk]
  • Re-refined 3qla structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QLA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QLA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QLA, from MSDmotif at EBI
  • Fold representative 3qla from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qla_F] [3qla_C] [3qla_D] [3qla] [3qla_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QLA: [RING ] by SMART
  • Other resources with information on 3QLA
  • Community annotation for 3QLA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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