3QLC Transcription Structural Protein date Feb 02, 2011
title Complex Structure Of Atrx Add Domain Bound To Unmodified H3 Peptide
authors H.Li, D.J.Patel
compound source
Molecule: Transcriptional Regulator Atrx
Chain: A, B
Fragment: N-Terminal Add Domain, Unp Residues 167-289
Synonym: Atp-Dependent Helicase Atrx, X-Linked Helicase II, Nuclear Protein, Xnp, Znf-Hx;
Ec: 3.6.4.12
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atrx, Rad54l, Xh2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p

Molecule: Peptide Of Histone H3.3
Chain: C, D
Fragment: N-Terminal Tail, Unp Residues 2-16
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: P 32 2 1
R_factor 0.194 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.607 80.607 136.173 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand ZN enzyme Hydrolase E.C.3.6.4.12 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3qlc.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (3qlc.pdb2.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 3QLC
  • CSU: Contacts of Structural Units for 3QLC
  • Structure Factors (135 Kb)
  • Retrieve 3QLC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QLC from S2C, [Save to disk]
  • Re-refined 3qlc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QLC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QLC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QLC, from MSDmotif at EBI
  • Fold representative 3qlc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qlc_C] [3qlc_A] [3qlc] [3qlc_B] [3qlc_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QLC: [RING ] by SMART
  • Other resources with information on 3QLC
  • Community annotation for 3QLC at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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