3QOR Protein Binding, Cell Cycle date Feb 10, 2011
title Crystal Structure Of Human Nuclear Migration Protein Nudc
authors U.Derewenda, Z.Derewenda, M.Zheng
compound source
Molecule: Nuclear Migration Protein Nudc
Chain: A
Fragment: Residues 158-274
Synonym: Nuclear Distribution Protein C Homolog
Engineered: Yes
Mutation: Yes
Other_details: Cys188 Is Modified To S-Oxy Cysteine
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudc
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Migration Protein Nudc
Chain: B
Fragment: Residues 158-274
Synonym: Nuclear Distribution Protein C Homolog
Engineered: Yes
Mutation: Yes
Other_details: Cys188 Is Modified To 3-Sulfinoalanine

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudc
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Migration Protein Nudc
Chain: C
Fragment: Residues 158-274
Synonym: Nuclear Distribution Protein C Homolog
Engineered: Yes
Mutation: Yes
Other_details: Cys188 Is Unmodified

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudc
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nuclear Migration Protein Nudc
Chain: D, E
Fragment: Residues 158-274
Synonym: Nuclear Distribution Protein C Homolog
Engineered: Yes
Mutation: Yes
Other_details: Cys188 Is Modified To Cysteinesulfonic Acid

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.173 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.734 51.820 92.854 90.00 90.58 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand ACT, CSD, CSX, OCS enzyme
note 3QOR is a representative structure
Primary referenceStructural Features and Chaperone Activity of the NudC Protein Family., Zheng M, Cierpicki T, Burdette AJ, Utepbergenov D, Janczyk PL, Derewenda U, Stukenberg PT, Caldwell KA, Derewenda ZS, J Mol Biol. 2011 Jun 24;409(5):722-41. Epub 2011 Apr 21. PMID:21530541
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (3qor.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (3qor.pdb2.gz) 26 Kb
  • Biological Unit Coordinates (3qor.pdb3.gz) 26 Kb
  • Biological Unit Coordinates (3qor.pdb4.gz) 25 Kb
  • Biological Unit Coordinates (3qor.pdb5.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 3QOR
  • CSU: Contacts of Structural Units for 3QOR
  • Structure Factors (468 Kb)
  • Retrieve 3QOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QOR from S2C, [Save to disk]
  • Re-refined 3qor structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QOR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QOR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qor_C] [3qor_E] [3qor_D] [3qor] [3qor_A] [3qor_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QOR
  • Community annotation for 3QOR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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