3QOX Transferase date Feb 11, 2011
title Dot1l Structure In Complex With Sah
authors L.Jin
compound source
Molecule: Histone-Lysine N-Methyltransferase
Chain: A
Fragment: Unp Residues 1-416
Synonym: Dot1-Like Protein, Histone H3-K79 Methyltransferas Hmtase, Lysine N-Methyltransferase 4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dot1l, Kiaa1814, Kmt4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.218 R_Free 0.252
length a length b length c angle alpha angle beta angle gamma
152.710 152.710 51.310 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand SAH, SO4 BindingDB enzyme Transferase E.C. BRENDA

Primary referenceChemogenetic Analysis of Human Protein Methyltransferases., Richon VM, Johnston D, Sneeringer CJ, Jin L, Majer CR, Elliston K, Fred Jerva L, Scott MP, Copeland RA, Chem Biol Drug Des. 2011 May 12. doi: 10.1111/j.1747-0285.2011.01135.x. PMID:21564555
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3qox.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3QOX
  • CSU: Contacts of Structural Units for 3QOX
  • Structure Factors (454 Kb)
  • Retrieve 3QOX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QOX from S2C, [Save to disk]
  • Re-refined 3qox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QOX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QOX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QOX, from MSDmotif at EBI
  • Fold representative 3qox from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qox_A] [3qox]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QOX
  • Community annotation for 3QOX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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