OCA Atlas for 3QPB

3QPB

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

R1P, URA

enzyme

Gene

Gene
Ontology

Chain	Function	Process	Component
H, O, D, L, K, F, M, C, E, A, Q, B, R, P, G, J, N, I

Primary reference

The Crystal Structure of Streptococcus pyogenes Uridine Phosphorylase Reveals a Distinct Subfamily of Nucleoside Phosphorylases., Tran TH, Christoffersen S, Allan PW, Parker WB, Piskur J, Serra I, Terreni M, Ealick SE, Biochemistry. 2011 Aug 2;50(30):6549-6558. Epub 2011 Jul 8. PMID:21707079

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (733 Kb) [Save to disk]

Biological Unit Coordinates (3qpb.pdb1.gz) 249 Kb

Biological Unit Coordinates (3qpb.pdb2.gz) 249 Kb

Biological Unit Coordinates (3qpb.pdb3.gz) 242 Kb

LPC: Ligand-Protein Contacts for 3QPB

CSU: Contacts of Structural Units for 3QPB

Structure Factors (3439 Kb)

Retrieve 3QPB in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3QPB from S2C, [Save to disk]

Re-refined 3qpb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3QPB in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3qpb] [3qpb_A] [3qpb_B] [3qpb_C] [3qpb_D] [3qpb_E] [3qpb_F] [3qpb_G] [3qpb_H] [3qpb_I] [3qpb_J] [3qpb_K] [3qpb_L] [3qpb_M] [3qpb_N] [3qpb_O] [3qpb_P] [3qpb_Q] [3qpb_R]

SWISS-PROT database:

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