3QPU Transferase,Hydrolase date Feb 14, 2011
title Pfkfb3 In Complex With Ppi
authors M.C.Cavalier, S.G.Kim, D.Neau, Y.H.Lee
compound source
Molecule: 6-Phosphofructo-2-Kinasefructose-2,6-Biphosphata
Chain: A
Synonym: 6pf-2-Kfru-2,6-P2ase 3, Pfkfbpase 3, 6pf-2-Kfru Brainplacenta-Type Isozyme, Renal Carcinoma Antigen Ny-Ren 2, 6-Phosphofructo-2-Kinase, Fructose-2,6-Bisphosphatase;
Ec: 2.7.1.105, 3.1.3.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pfkfb3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.184 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.975 102.975 258.128 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand EDO, POP, SRT enzyme Transferase E.C.2.7.1.105 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular basis of the Fructose-2,6-bisphosphatase reaction of PFKFB3: Transition state and the C-terminal function., Cavalier MC, Kim SG, Neau D, Lee YH, Proteins. 2011 Dec 21. doi: 10.1002/prot.24015. PMID:22275052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (3qpu.pdb1.gz) 327 Kb
  • LPC: Ligand-Protein Contacts for 3QPU
  • CSU: Contacts of Structural Units for 3QPU
  • Structure Factors (799 Kb)
  • Retrieve 3QPU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QPU from S2C, [Save to disk]
  • Re-refined 3qpu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QPU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QPU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QPU, from MSDmotif at EBI
  • Fold representative 3qpu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qpu_A] [3qpu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QPU: [PGAM ] by SMART
  • Other resources with information on 3QPU
  • Community annotation for 3QPU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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