3QQ7 Transport Protein date Feb 15, 2011
title Crystal Structure Of The P97 N-Terminal Domain
authors P.Haenzelmann, H.Schindelin
compound source
Molecule: Transitional Endoplasmic Reticulum Atpase
Chain: A
Fragment: Unp Residues 2-187
Synonym: Ter Atpase, 15s Mg(2+)-Atpase P97 Subunit, Valosin Containing Protein, Vcp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vcp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31
R_factor 0.195 R_Free 0.236
length a length b length c angle alpha angle beta angle gamma
60.560 60.560 63.110 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.65 Å
ligand CL, CO, GOL, HEZ enzyme
Primary referenceHierarchical Binding of Cofactors to the AAA ATPase p97., Hanzelmann P, Buchberger A, Schindelin H, Structure. 2011 Jun 8;19(6):833-43. PMID:21645854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3qq7.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3QQ7
  • CSU: Contacts of Structural Units for 3QQ7
  • Structure Factors (384 Kb)
  • Retrieve 3QQ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QQ7 from S2C, [Save to disk]
  • Re-refined 3qq7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QQ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QQ7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QQ7, from MSDmotif at EBI
  • Fold representative 3qq7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qq7] [3qq7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3QQ7: [CDC48_2] [CDC48_N ] by SMART
  • Other resources with information on 3QQ7
  • Community annotation for 3QQ7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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