3QRJ Transferase Transferase Inhibitor date Feb 18, 2011
title The Crystal Structure Of Human Abl1 Kinase Domain T315i Muta Complex With Dcc-2036
authors W.W.Chan, S.C.Wise, M.D.Kaufman, Y.M.Ahn, C.L.Ensinger, T.Haack, M J.Jones, J.W.Lord, W.P.Lu, D.Miller, W.C.Patt, B.D.Smith, P.A.Pet T.J.Rutkoski, H.Telikepalli, L.Vogeti, T.Yao, L.Chun, R.Clark, P.Evangelista, L.C.Gavrilescu, K.Lazarides, V.M.Zaleskas, L.J.S R.A.Van Etten, D.L.Flynn
compound source
Molecule: Tyrosine-Protein Kinase Abl1
Chain: A, B
Fragment: Kinase Domain, Unp Residues 229-499
Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 1, Oncogene C-Abl, P150;
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abl1, Abl, Jtk7
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.229 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.261 59.435 76.285 90.00 109.55 90.00
method X-Ray Diffractionresolution 1.82 Å
ligand 919 enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceConformational control inhibition of the BCR-ABL1 tyrosine kinase, including the gatekeeper T315I mutant, by the switch-control inhibitor DCC-2036., Chan WW, Wise SC, Kaufman MD, Ahn YM, Ensinger CL, Haack T, Hood MM, Jones J, Lord JW, Lu WP, Miller D, Patt WC, Smith BD, Petillo PA, Rutkoski TJ, Telikepalli H, Vogeti L, Yao T, Chun L, Clark R, Evangelista P, Gavrilescu LC, Lazarides K, Zaleskas VM, Stewart LJ, Van Etten RA, Flynn DL, Cancer Cell. 2011 Apr 12;19(4):556-68. PMID:21481795
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (3qrj.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (3qrj.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (3qrj.pdb3.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 3QRJ
  • CSU: Contacts of Structural Units for 3QRJ
  • Structure Factors (615 Kb)
  • Retrieve 3QRJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QRJ from S2C, [Save to disk]
  • Re-refined 3qrj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QRJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QRJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QRJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qrj_A] [3qrj_B] [3qrj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QRJ: [TyrKc ] by SMART
  • Other resources with information on 3QRJ
  • Community annotation for 3QRJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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