3QU8 Oxidoreductase Oxidoreductase Inhibitor date Feb 23, 2011
title Crystal Structure Of A Human Cytochrome P450 2b6 (Y226hk262 Complex With The Inhibitor 4-(4-Nitrobenzyl)Pyridine.
authors M.B.Shah, J.Pascual, C.D.Stout, J.R.Halpert
compound source
Molecule: Cytochrome P450 2b6
Chain: A, B, C, D, E, F
Fragment: Cytochrome P450 2b6, Residues 3-21 Deleted
Ec: 1.14.14.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp2b6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk
symmetry Space Group: P 32
R_factor 0.218 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.880 101.880 299.509 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand 3QU, CM5, HEM enzyme Oxidoreductase E.C.1.14.14.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructures of Cytochrome P450 2B6 Bound to 4-Benzylpyridine and 4-(4-Nitrobenzyl)pyridine: Insight into Inhibitor Binding and Rearrangement of Active Site Side Chains., Shah MB, Pascual J, Zhang Q, Stout CD, Halpert JR, Mol Pharmacol. 2011 Aug 29. PMID:21875942
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (462 Kb) [Save to disk]
  • Biological Unit Coordinates (3qu8.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (3qu8.pdb2.gz) 81 Kb
  • Biological Unit Coordinates (3qu8.pdb3.gz) 81 Kb
  • Biological Unit Coordinates (3qu8.pdb4.gz) 81 Kb
  • Biological Unit Coordinates (3qu8.pdb5.gz) 80 Kb
  • Biological Unit Coordinates (3qu8.pdb6.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 3QU8
  • CSU: Contacts of Structural Units for 3QU8
  • Structure Factors (1216 Kb)
  • Retrieve 3QU8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QU8 from S2C, [Save to disk]
  • Re-refined 3qu8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QU8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QU8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QU8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qu8] [3qu8_B] [3qu8_C] [3qu8_F] [3qu8_D] [3qu8_A] [3qu8_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QU8
  • Community annotation for 3QU8 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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