3QUE Transferase Transferase Inhibitor date Feb 23, 2011
title Human P38 Map Kinase In Complex With Skepinone-L
authors C.Gruetter, S.Mayer-Wrangowski, A.Richters, D.Rauh
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Cytokine Suppressive Anti- Inflammatory Drug-Binding Protein, Csaid-Binding Protein, C Kinase Mxi2, Max-Interacting Protein 2, Mitogen-Activated P Kinase P38 Alpha, Map Kinase P38 Alpha, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex 6p-1
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.311
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.408 74.016 77.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 3FF, BOG BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSkepinone-L is a selective p38 mitogen-activated protein kinase inhibitor., Koeberle SC, Romir J, Fischer S, Koeberle A, Schattel V, Albrecht W, Grutter C, Werz O, Rauh D, Stehle T, Laufer SA, Nat Chem Biol. 2011 Dec 25. doi: 10.1038/nchembio.761. PMID:22198732
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3que.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3QUE
  • CSU: Contacts of Structural Units for 3QUE
  • Structure Factors (82 Kb)
  • Retrieve 3QUE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QUE from S2C, [Save to disk]
  • Re-refined 3que structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QUE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QUE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QUE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3que] [3que_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QUE: [S_TKc ] by SMART
  • Other resources with information on 3QUE
  • Community annotation for 3QUE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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