3QW8 Hydrolase Hydrolase Inhibitor date Feb 27, 2011
title Crystal Structure Of The Protease Domain Of Botulinum Neurot Serotype A With A Peptide Inhibitor Crgc
authors D.Kumaran, S.Swaminathan
compound source
Molecule: Botulinum Neurotoxin Type A
Chain: A
Fragment: Light Chain (Unp Residues 1-424)
Synonym: Bonta, Bontoxilysin-A, Botox
Ec: 3.4.24.69
Engineered: Yes
Organism_scientific: Clostridium Botulinum
Organism_taxid: 441771
Strain: Hall Atcc 3502 Nctc 13319 Type A
Gene: Bota, Cbo0806, Clc_0862
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b

Molecule: Inhibitory Peptide Crgc
Chain: B
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.668 66.278 64.768 90.00 98.42 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand EDO, NA, NH2, SO4, ZN enzyme Hydrolase E.C.3.4.24.69 BRENDA
Gene CLC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePeptide inhibitors of botulinum neurotoxin serotype A: design, inhibition, cocrystal structures, structure-activity relationship and pharmacophore modeling., Kumar G, Kumaran D, Ahmed SA, Swaminathan S, Acta Crystallogr D Biol Crystallogr. 2012 May;68(Pt 5):511-20. Epub 2012 Apr 17. PMID:22525749
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (3qw8.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3QW8
  • CSU: Contacts of Structural Units for 3QW8
  • Structure Factors (354 Kb)
  • Retrieve 3QW8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QW8 from S2C, [Save to disk]
  • Re-refined 3qw8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QW8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QW8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QW8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qw8_A] [3qw8_B] [3qw8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QW8
  • Community annotation for 3QW8 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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