3QWP Transferase date Feb 28, 2011
title Crystal Structure Of Set And Mynd Domain Containing 3; Zinc Mynd Domain-Containing Protein 1
authors A.Dong, L.Dombrovski, Y.Li, A.Wernimont, J.Weigelt, C.Bountra, C.H.Arrowsmith, A.M.Edwards, J.Min, H.Wu, Structural Genomics C (Sgc)
compound source
Molecule: Set And Mynd Domain-Containing Protein 3
Chain: A
Synonym: Zinc Finger Mynd Domain-Containing Protein 1
Ec: 2.1.1.43
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smyd3, Zmynd1, Znfn3a1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) V2rprare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.303 66.206 107.387 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.53 Å
ligand GOL, SAM, ZN enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (3qwp.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 3QWP
  • CSU: Contacts of Structural Units for 3QWP
  • Structure Factors (962 Kb)
  • Retrieve 3QWP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QWP from S2C, [Save to disk]
  • Re-refined 3qwp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QWP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QWP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QWP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qwp] [3qwp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QWP: [SET ] by SMART
  • Other resources with information on 3QWP
  • Community annotation for 3QWP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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