3QX5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 02P, GOL, NA, NAG, PO4, TYS enzyme
Gene
Ontology
ChainFunctionProcessComponent
H


L


Primary referenceImpact of ligand and protein desolvation on ligand binding to the S1 pocket of thrombin., Biela A, Khayat M, Tan H, Kong J, Heine A, Hangauer D, Klebe G, J Mol Biol. 2012 May 18;418(5):350-66. Epub 2012 Feb 21. PMID:22366545
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (3qx5.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 3QX5
  • CSU: Contacts of Structural Units for 3QX5
  • Structure Factors (957 Kb)
  • Retrieve 3QX5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QX5 from S2C, [Save to disk]
  • Re-refined 3qx5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3QX5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qx5] [3qx5_H] [3qx5_I] [3qx5_L]
  • SWISS-PROT database:
  • Domain found in 3QX5: [Tryp_SPc ] by SMART

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