3QYB Hydrolase Activator date Mar 03, 2011
title X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domai
authors S.Y.Park, S.E.Shoelson
compound source
Molecule: Tbc1 Domain Family Member 4
Chain: A
Fragment: Rab-Gap Domain, Unp Residues 874-1170
Synonym: Akt Substrate Of 160 Kda, As160
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbc1d4, As160, Kiaa0603
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.246 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.214 151.214 53.155 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.50 Å
Primary referenceCrystal structures of Human TBC1D1 and TBC1D4 (AS160) RabGAP domains reveal critical elements for GLUT4 translocation., Park SY, Jin W, Woo JR, Shoelson SE, J Biol Chem. 2011 Mar 23. PMID:21454505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3qyb.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 3QYB
  • Structure Factors (120 Kb)
  • Retrieve 3QYB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QYB from S2C, [Save to disk]
  • Re-refined 3qyb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3QYB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3QYB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QYB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qyb] [3qyb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QYB: [TBC ] by SMART
    • Other resources with information on 3QYB
  • Community annotation for 3QYB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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