3QYE Hydrolase Activator date Mar 03, 2011
title Crystal Structure Of Human Tbc1d1 Rabgap Domain
authors S.Y.Park, S.E.Shoelson
compound source
Molecule: Tbc1 Domain Family Member 1
Chain: A, B
Fragment: Rab-Gap Domain, Unp Residues 750-1076
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbc1d1, Kiaa1108
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Pet28a
symmetry Space Group: P 43 21 2
R_factor 0.199 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.360 117.360 141.270 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Primary referenceCrystal structures of Human TBC1D1 and TBC1D4 (AS160) RabGAP domains reveal critical elements for GLUT4 translocation., Park SY, Jin W, Woo JR, Shoelson SE, J Biol Chem. 2011 Mar 23. PMID:21454505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (3qye.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (3qye.pdb2.gz) 56 Kb
  • CSU: Contacts of Structural Units for 3QYE
  • Structure Factors (677 Kb)
  • Retrieve 3QYE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QYE from S2C, [Save to disk]
  • Re-refined 3qye structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3QYE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3QYE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3QYE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qye_A] [3qye] [3qye_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QYE: [TBC ] by SMART
    • Other resources with information on 3QYE
  • Community annotation for 3QYE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science