3QYN	Transcription Activator Dna	date	Mar 03, 2011
title	Structure Of P63 Dna Binding Domain In Complex With A 22 Bas Rich Response Element Containing 2 Base Pair Spacer Between Sites
authors	C.Chen, O.Herzberg
compound		source
Molecule: Tumor Protein 63 Chain: A, B, C, D Fragment: Dna Binding Domain (Unp Residues 166-362) Synonym: P63, Chronic Ulcerative Stomatitis Protein, Cusp, Keratinocyte Transcription Factor Ket, Transformation-Relat 63, Tp63, Tumor Protein P73-Like, P73l, P40, P51; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ket, P63, P73h, P73l, Tp63, Tp73l Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta II (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: 5'-D(Apapapcpaptpgptptptptpapapapa Gptptpt)-3'; Chain: E, F Engineered: Yes Other_details: Full Response Element With A 2-Base-Pair Spa		Synthetic: Yes Other_details: Contains A Consensus P63 Binding Motif
symmetry	Space Group: P 63	R_factor 0.210 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 140.984 140.984 119.346 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structures of p63 DNA binding domain in complexes with half-site and with spacer-containing full response elements., Chen C, Gorlatova N, Kelman Z, Herzberg O, Proc Natl Acad Sci U S A. 2011 Apr 19;108(16):6456-6461. Epub 2011 Apr 4. PMID:21464285

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (301 Kb) [Save to disk] Biological Unit Coordinates (3qyn.pdb1.gz) 293 Kb LPC: Ligand-Protein Contacts for 3QYN CSU: Contacts of Structural Units for 3QYN Structure Factors (771 Kb) Retrieve 3QYN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3QYN from S2C, [Save to disk] Re-refined 3qyn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3QYN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3QYN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3QYN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3qyn_D] [3qyn] [3qyn_C] [3qyn_E] [3qyn_B] [3qyn_F] [3qyn_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3QYN

Community annotation for 3QYN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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