3QZ7 T-3 ternary complex of Dpo4 date
authors Pata, J.D., Wu, Y., Wilson, R.C.
compound source
symmetry
R_factor
R_Free 0.2668
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand CA, DCP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Y-family DNA polymerase Dpo4 uses a template-slippage mechanism to create single-base deletions., Wu Y, Wilson RC, Pata JD, J Bacteriol. 2011 Mar 18. PMID:21421759
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (3qz7.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 3QZ7
  • CSU: Contacts of Structural Units for 3QZ7
  • Structure Factors (501 Kb)
  • Retrieve 3QZ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QZ7 from S2C, [Save to disk]
  • Re-refined 3qz7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QZ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QZ7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QZ7, from MSDmotif at EBI
  • Fold representative 3qz7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qz7_T] [3qz7] [3qz7_A] [3qz7_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3QZ7
  • Community annotation for 3QZ7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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