3QZF Transferase Transferase Inhibitor date Mar 06, 2011
title Cdk2 In Complex With Inhibitor Jws-6-52
authors S.Betzi, R.Alam, H.Han, A.Becker, E.Schonbrunn
compound source
Molecule: Cyclin-Dependent Kinase 2
Chain: A
Synonym: Cdk2, Cell Division Protein Kinase 2, P33 Protein
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tuner(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-1
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.900 71.630 71.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand X66 enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (3qzf.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3QZF
  • CSU: Contacts of Structural Units for 3QZF
  • Structure Factors (153 Kb)
  • Retrieve 3QZF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3QZF from S2C, [Save to disk]
  • Re-refined 3qzf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3QZF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3QZF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3QZF, from MSDmotif at EBI
  • Fold representative 3qzf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3qzf] [3qzf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3QZF: [S_TKc ] by SMART
  • Other resources with information on 3QZF
  • Community annotation for 3QZF at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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